Community resources


Immuneering

Careers in computational biology.


Code


SWING

Sliding Window Inference for Network Generation (SWING) is a network inference framework that identifies associations between genes using time-series gene expression data. SWING is based on multivariate Granger causality and sliding window regression and is currently implemented in python. Click here to download.

DIONESUS

A scalable recursive algorithm based on partial least squares regression. On a millisecond time-scale, this algorithm reconstructs a large phosphoproteomic signaling network from microwestern array data.

Code coming soon!

PubMed modeling search strings

Python code that generates the search strings used in the Current Opinion in Biotechnology "Multi-class and multi-scale models of complex biological phenomena" review. Click here to download.